Enter a variant below to see its   SpliceAI , Pangolin , PromoterAI , PrimateAI-3D ,
AlphaMissense and other scores:
[more details]

Examples   (on hg38):
NM_001089.3(ABCA3):c.875A>T (p.Glu292Val)
chr8-140300616-T-G
6   31740453   G   T [show more examples]
Genome version:
Gencode:
Max distance:
SpliceAI-lookup/issues: issues or feature requests for this website

June 27, 2025
- added PromoterAI scores for promoters of all protein-coding transcripts in Gencode v39 (not just the canonical transcripts)
- added PromoterAI scores for hg19

December 5, 2024
- added PrimateAI-3D, PromoterAI, AlphaMissense and other scores
- provided a table with detailed SpliceAI scores for insertion variants whenever donor or acceptor gain is predicted to occurs within the inserted sequence itself. This addresses issue #84.

[show older updates]

Related web tools:
liftover: for variants/positions/intervals (hg19 <=> hg38 <=> T2T)
TGG Viewer: igv.js-based web viewer for public reference tracks and private data in Google Storage buckets. Has custom track types for RNA-seq splice junctions and gCNV variants.