SpliceAI-lookup

To generate or update the transcript annotation files needed for running SpliceAI and Pangolin:

1. Download the latest “basic” gene annotations in GTF format from Gencode for both GRCh38 and GRCh37.
2. Update the Gencode version string at the top of these bash scripts, and then run them:
   • update_json_annotation_files.sh
   • update_SpliceAI_annotation_txt_files.sh
   • update_pangolin_db_files.sh
3. Update the GENCODE_VERSION string in ../server.py

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